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prism-accumulation
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1956 Commits (6b15078f4a4fa1c19a02c612fae720f71985922b)
 

Author SHA1 Message Date
Dave Parker ab831c8a6c Allow -importinitdist for steady-state (as well as transient).
14 years ago
Dave Parker 535a42be04 Refactor (forwards) steady-state computation in symbolic engines, partly for alignment with future corresponding code in explicit engine, partly to allow arbitrary initial distributions, as for transient.
14 years ago
Dave Parker ad294aa981 Added dot product method to symbolic StateValue classes.
14 years ago
Dave Parker 1915395882 Bugfix: small optimisation was never enabled during stead-state computation.
14 years ago
Dave Parker e0d68f8b74 Bug fix: PTA rewards on digital clocks: forgot to scale by GCD.
14 years ago
Dave Parker 0022e81b1b Parser handles invalid literals (too big etc.) + tidy up of parser error reporting code.
14 years ago
Dave Parker b2f33e44a7 Fixed "changed" setting in graph display of simulation paths.
14 years ago
Dave Parker 7af19279f6 GUI bugfix: NPE.
14 years ago
Dave Parker 4f2759fadb CHANGELOG.
14 years ago
Dave Parker 21eae01cfb GUI bug fix (crash caused by model tree not displaying clocks, spotted by pk123 on forum).
14 years ago
Dave Parker 57259f67c1 Updated version of Path Plot dialog, including specification of max path length.
14 years ago
Dave Parker 74717ecb9a Updated version of Path Plot dialog, including specification of variables.
14 years ago
Dave Parker b80badd54c Shortcut for new path plot (Ctrl/Cmd-F8).
14 years ago
Dave Parker 5131fb407f Some useful code (commented out) for getting variance etc. from simulation results.
14 years ago
Dave Parker 5486e68282 Check for duplicate ids/names in reactions-to-PRISM translation.
14 years ago
Dave Parker 0de837a4b8 Typo
14 years ago
Dave Parker 0245cf77b4 Bug fix: crash on invalid integer reward struct indices.
14 years ago
Dave Parker 19b18a0c3f Bugfix in approximate simulation: property error was causing null ptr.
14 years ago
Dave Parker d528208cc7 Small GUI fixes: resets of warning counters.
14 years ago
Dave Parker 6b55d95ebe Strip comments (commencing #) from reactions files.
14 years ago
Dave Parker 90b49c3e64 Strip comments (commencing #) from reactions files.
14 years ago
Dave Parker 8ff31815ca Reactions-to-PRISM checks parameter values for valid doubles.
14 years ago
Dave Parker 5b9bc87bec Reactions-to-PRISM checks parameter values for valid doubles.
14 years ago
Dave Parker f412d3115e Graph chooser dialog defaults to last graph created for "existing graph".
14 years ago
Dave Parker e1e6267210 Move path plot thread to GUI to allow display of warnings/errors.
14 years ago
Dave Parker 502b6f1281 Support for reversible reactions in reactions-to-PRISM converter.
14 years ago
Dave Parker 06d0fe3c25 First version of reactions-to-PRISM converter.
14 years ago
Dave Parker 9684963804 Utility method: join/implode method for strings.
14 years ago
Dave Parker 2752fbb6d0 Re-factor SBML-to-PRISM translator.
14 years ago
Dave Parker 94dbe03ecb Re-factor SBML-to-PRISM translator.
14 years ago
Dave Parker f369c6599a Re-factor SBML-to-PRISM translator.
14 years ago
Dave Parker cdac320532 Fix in parser: make keyword list be created statically.
14 years ago
Dave Parker e6fa6b49f0 Re-factor SBML-to-PRISM translator.
14 years ago
Dave Parker 6d502769be GUI simulation path plot and can show vars and/or rewards.
14 years ago
Dave Parker a28c14715c Simulation path generation handles empty vars=().
14 years ago
Dave Parker 9dc7609982 Changed/all-steps option in Path Plot Display dialog now respected.
14 years ago
Dave Parker 6d9806ad16 PathToText respects new "change" option + bugfixes.
14 years ago
Dave Parker d1e4de5fb3 Make "rewards" option of simpath consistent with others.
14 years ago
Dave Parker 2a2bdf6220 Fixes in PathDisplayer classes.
14 years ago
Dave Parker 41ad029281 Default to "changes" in "plot path details" dialog.
14 years ago
Dave Parker 2b85d7307d Tidy/fix double click detection in GUI simulator.
14 years ago
Dave Parker af37dc9864 Tidy/fix double click detection in GUI simulator.
14 years ago
Dave Parker d0bf75014f Improved "Path Plot Details" dialog.
14 years ago
Dave Parker cadd9da282 GUI simulation path plotting handles non-integer variables.
14 years ago
Dave Parker f19c4238d3 Type conversion bug.
14 years ago
Dave Parker 5d37e99d57 Type tidying in castValueTo methods.
14 years ago
Dave Parker 1bd8b1c658 Remove un-needed code.
14 years ago
Dave Parker d960bf8020 Better handling of errors in simulator calls from GUI.
14 years ago
Dave Parker 992c0864dc New/improved simulation path plotting functionality.
14 years ago
Dave Parker 09f8b2b8d9 Utility array copy methods.
14 years ago