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prism-accumulation
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332 Commits (5a13c4cf57f1beba6a4b2a37d4e455c6f2488fd2)

Author SHA1 Message Date
Dave Parker 21bfd39f10 SBML-to-PRISM updates: maxAmount tidy up, listOfParameters bugfix, support for product stoichiometries.
19 years ago
Dave Parker e52675b838 Bug fix: possibly missing parameterList in SBM reaction list.
19 years ago
Dave Parker 982825694c Removed debug output from MathML2Prism.
19 years ago
Dave Parker df436b3734 MathML2Prism allows renaming of identifiers.
19 years ago
Dave Parker 0f0236190e Added parser utility method to test if a string is a PRISM language keyword.
19 years ago
Mark Kattenbelt 2f9e7143d0 Moved fix that printed semicolon behind global declaration to modulesfile, where it belongs
19 years ago
Dave Parker ee6dfc9c33 New options for -simpath: loopcheck=true/false, repeat=N (latter for deadlock generation).
19 years ago
Dave Parker eacd8b3bd8 Added log function to PRISM language (but not actually supported yet, except in constant evaluations).
19 years ago
Dave Parker 4387775b33 Added reach info to -extraddinfo output.
19 years ago
Dave Parker 2b39714fda Improvements to output of DD vars for -extraddinfo switch.
19 years ago
Dave Parker 3afc84ea1d Preprocessor now ignores #s within comments (easy to change this back).
19 years ago
Dave Parker 182003d0ee Preprocessor errors should go to stderr not stdout.
19 years ago
Dave Parker a1b7a85a29 Added new "rows" format for matrix export and -exportrows command-line switch.
19 years ago
Dave Parker ea856282e1 Bug fix in Windows .bat files (for case where PRISM_DIR is set manually).
19 years ago
Dave Parker 1ab82223c8 Added -extraddinfo command-line switch to display extra info about some (MT)BDDs.
19 years ago
Dave Parker 4c05bfcab6 Added Java (to String) version of PrintTerminals(AndNumbers) functions.
19 years ago
Dave Parker 1f4f93780c Improved version of DD_PrintTerminals(AndNumbers) which handles negatives and +/- infinity.
19 years ago
Dave Parker e04086de83 New dummy module name in SBML converter.
19 years ago
Dave Parker cd0ebbde5b Bug fix in new R=?[C<=k] code for DTMCs.
19 years ago
Dave Parker 93e4bb398e Added SBML-to-PRISM generation code.
19 years ago
Dave Parker 3dac129c9b Added cumulative reward model checking for DTMCs (all 3 engines).
19 years ago
Mark Kattenbelt 3b4cebd783 Semicolon behind Declaration in toString()
19 years ago
Dave Parker cb7df46175 Typo in simulator GUI.
19 years ago
Mark Kattenbelt 1c0f0feeab Fixed bug where formula is not terminated by semicolon
19 years ago
Dave Parker d636ab1969 Addition of 64-bit PRISM branch to trunk.
19 years ago
Dave Parker e80af1a74b Make sure 3.1->3.1.1 changes included in trunk.
19 years ago
Dave Parker 8f8565a579 Removed redundant testing code.
19 years ago
Dave Parker 5ef3824832 Rearrangement and tidy-up of copyright/license info in file headers.
19 years ago
Dave Parker 6bbe33bf61 Fixes for possible bug in Windows launch scripts.
19 years ago
Dave Parker 9ea9d3b904 ModulesFile toString() function should display model type.
19 years ago
Mark Kattenbelt f59ab5b562 Small improvement to the Simulator GUI, the separator on the top can now be moved without constraints.
19 years ago
Mark Kattenbelt 8d1d7628e8 Added dialog when a deterministic loop causes exploration to stop prior to the users expectation.
19 years ago
Mark Kattenbelt 18b7e78149 Made cumulative time visible by default in SimulationView for CTMCs.
19 years ago
Mark Kattenbelt d522e5d792 Updates backtracking by time. Seems to work better. (1/2)
19 years ago
Dave Parker 0dd24cb137 Bug fix: wrong Swing window closing method (now caught at run-time by Java 6). Cheers Alistair.
19 years ago
Dave Parker eaed7b4233 Improved Java detetction in Makefile, including case where directory has a space, e.g. "Progam Files".
19 years ago
Dave Parker 683164b8c3 Removed unnecessary import statement (breaks under Java 6).
19 years ago
Mark Kattenbelt b587c24490 Added time-bounded backtracking. Does not work well when backtracking should be to the first state.
19 years ago
Dave Parker 1e0cbf5533 Missing Linux C++ #include.
19 years ago
Mark Kattenbelt 513081bb5f Added time-bound exploration option to the simulator. Needs make clean!
19 years ago
Mark Kattenbelt 550be3344d Made GUISimulatorUpdatesTable traversable with the Up and Down arrow keys when in focus, and also allows Enter to execute the update when in focus. Table has focus by default.
19 years ago
Mark Kattenbelt bb1155353e Redesign of GUISimulator interface.
19 years ago
Mark Kattenbelt eeea726580 Added an icon to the `make visible' and `make hidden' buttons in de view configuration dialog.
19 years ago
Mark Kattenbelt 5621b1bdb3 Added tooltips to the GUIGroupedTableHeader.
19 years ago
Mark Kattenbelt b274cf97eb Added tooltips to the cells of the GUISimulatorPathTable.
19 years ago
Mark Kattenbelt 6684d121be Removed System.out.println's
19 years ago
Mark Kattenbelt 2b308bfc17 Made a start of presenting doubles decently.
19 years ago
Mark Kattenbelt fbd754d91e Fixed removed preceding so cumulative time and cumulative rewards are recalculated. Don't forget to `make clean'.
19 years ago
Dave Parker ab301c47fd Code tidy in GUIMultiProperties.java.
19 years ago
Dave Parker d1bca01e7d Use reward structure name for experiment result name, i.e. Y-axis, where appropriate.
19 years ago