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Added sbml2prism script.

git-svn-id: https://www.prismmodelchecker.org/svn/prism/prism/trunk@9732 bbc10eb1-c90d-0410-af57-cb519fbb1720
master
Dave Parker 11 years ago
parent
commit
b8fc45249e
  1. 8
      prism/etc/scripts/sbml2prism
  2. 5
      prism/src/prism/SBML2Prism.java

8
prism/etc/scripts/sbml2prism

@ -0,0 +1,8 @@
#!/bin/sh
# Startup script for SBML to PRISM converter (Linux/Mac/Solaris)
# Launch using main PRISM script
PRISM_MAINCLASS="prism.SBML2Prism"
export PRISM_MAINCLASS
prism "$@"

5
prism/src/prism/SBML2Prism.java

@ -49,7 +49,8 @@ public class SBML2Prism extends Reactions2Prism implements EntityResolver
{
/**
* Calling point for command-line script:
* e.g. java -cp classes prism.SBML2Prism myfile.sbml 100
* This is probably the sbml2prism (found in etc/scripts)
* But it can also be called as, e.g.: java -cp classes prism.SBML2Prism myfile.sbml 100
* (100 denotes (integer) maximum for species population sizes, default is 100)
* (also used to compute amounts from (real-valued) concentrations)
*/
@ -58,7 +59,7 @@ public class SBML2Prism extends Reactions2Prism implements EntityResolver
PrismLog errLog = new PrismPrintStreamLog(System.err);
try {
if (args.length < 1) {
System.err.println("Usage: java -cp classes prism.SBML2Prism <sbml_file> [max_amount]");
System.err.println("Usage: sbml2prism <sbml_file> [max_amount]");
System.exit(1);
}
SBML2Prism sbml2prism = new SBML2Prism(errLog);

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